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protein databank (pdb) entry code 4ow2  (Databank Inc)

 
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    Structured Review

    Databank Inc protein databank (pdb) entry code 4ow2
    <t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
    Protein Databank (Pdb) Entry Code 4ow2, supplied by Databank Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/protein+databank+(pdb)+entry+code+4ow2/protein+databank++pdb++entry+code+4ow2/pmc04907486-397-15-16
    Average 90 stars, based on 1 article reviews
    protein databank (pdb) entry code 4ow2 - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells"

    Article Title: Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells

    Journal: PLoS Pathogens

    doi: 10.1371/journal.ppat.1005660

    A) YopM_34–481 was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal (PDB code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
    Figure Legend Snippet: A) YopM_34–481 was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal (PDB code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .

    Techniques Used: Construct



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    protein databank (pdb) entry code 4ow2  (Databank Inc)
    90
    Databank Inc protein databank (pdb) entry code 4ow2
    <t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
    Protein Databank (Pdb) Entry Code 4ow2, supplied by Databank Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/protein+databank+(pdb)+entry+code+4ow2/protein+databank++pdb++entry+code+4ow2/pmc04907486-397-15-16
    Average 90 stars, based on 1 article reviews
    protein databank (pdb) entry code 4ow2 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    A) YopM_34–481 was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal (PDB code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .

    Journal: PLoS Pathogens

    Article Title: Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells

    doi: 10.1371/journal.ppat.1005660

    Figure Lengend Snippet: A) YopM_34–481 was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal (PDB code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .

    Article Snippet: Relevant data of the YopM_34-481 crystal structure from Y. enterocolitica WA314 are deposited at the Protein Databank (PDB) ( http://www.rcsb.org/pdb/home/home.do ) with entry code 4OW2.

    Techniques: Construct